runner

runner

Pipeline runner for YAML-configured execution.

Orchestrates data loading, pipeline execution, and result saving based on validated YAML configuration.

run_pipeline

run_pipeline(config, data_path, output_dir=None)

Run a modality pipeline from YAML configuration.

PARAMETER	DESCRIPTION
config	Validated pipeline configuration. TYPE: PipelineConfig
data_path	Path to input data (NIfTI file or directory). TYPE: str or Path
output_dir	Output directory. If None, defaults to {data_path}/osipy_output when data_path is a directory, or {data_path_parent}/osipy_output when data_path is a file. TYPE: str or Path or None DEFAULT: None