Tutorials

End-to-end analysis workflows for each imaging modality.

Most users should start with the CLI — see How to Run Pipeline from YAML. The tutorials below cover the Python API for users who need programmatic control over individual analysis steps.

Beginner

• Getting Started — Install osipy, verify your setup, and run your first analysis.

By Modality (Python API)

• DCE-MRI Analysis — T1 mapping, signal-to-concentration conversion, and pharmacokinetic model fitting with the Extended Tofts model.
• ASL CBF Quantification — Cerebral blood flow from pCASL data with M0 calibration.
• IVIM Analysis — Separate diffusion and perfusion components using bi-exponential fitting of multi-b-value DWI data.
• DSC-MRI Analysis — CBV, CBF, and MTT from DSC-MRI using SVD deconvolution with optional leakage correction.