src.original.fitting package

Subpackages

• src.original.fitting.ASD_MemorialSloanKettering package
  • Module contents
• src.original.fitting.DK_OGC_AmsterdamUMC package
  • Subpackages
    • src.original.fitting.DK_OGC_AmsterdamUMC.utils package
      • Subpackages
      • Module contents
  • Module contents
• src.original.fitting.DT_IIITN package
  • Submodules
  • src.original.fitting.DT_IIITN.wls_ivim_fitting module
    • wls_ivim_fit()
  • Module contents
• src.original.fitting.ETP_SRI package
  • Submodules
  • src.original.fitting.ETP_SRI.LinearFitting module
    • LinearFit
      • LinearFit.accepted_dimensions()
      • LinearFit.ivim_fit()
      • LinearFit.linear_fit()
  • Module contents
• src.original.fitting.IAR_LundUniversity package
  • Submodules
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp module
    • IvimFit
      • IvimFit.D
      • IvimFit.D_star
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelBiExp
      • IvimModelBiExp.fit()
      • IvimModelBiExp.ivim_model()
      • IvimModelBiExp.rescale_bounds_and_initial_guess()
      • IvimModelBiExp.set_bounds()
      • IvimModelBiExp.set_initial_guess()
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear module
    • IvimFit
      • IvimFit.D
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelLinear
      • IvimModelLinear.fit()
      • IvimModelLinear.rescale_bounds_and_initial_guess()
      • IvimModelLinear.set_bounds()
      • IvimModelLinear.set_initial_guess()
      • IvimModelLinear.sivim_model()
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix module
    • IvimFit
      • IvimFit.D
      • IvimFit.D_star
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelVP
      • IvimModelVP.cvx_fit()
      • IvimModelVP.fit()
      • IvimModelVP.ivim_mix_cost_one()
      • IvimModelVP.nlls_cost()
      • IvimModelVP.phi()
      • IvimModelVP.stoc_search_cost()
      • IvimModelVP.x_and_f_to_x_f()
      • IvimModelVP.x_f_to_x_and_f()
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro module
    • IvimFit
      • IvimFit.D
      • IvimFit.D_star
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelTopoPro
      • IvimModelTopoPro.cvx_fit()
      • IvimModelTopoPro.fit()
      • IvimModelTopoPro.ivim_shgo()
      • IvimModelTopoPro.nlls_cost()
      • IvimModelTopoPro.phi()
      • IvimModelTopoPro.rescale_bounds_and_initial_guess()
      • IvimModelTopoPro.stoc_search_cost()
      • IvimModelTopoPro.x_and_f_to_x_f()
      • IvimModelTopoPro.x_f_to_x_and_f()
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step module
    • IvimFit
      • IvimFit.D
      • IvimFit.D_star
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelSegmented2Step
      • IvimModelSegmented2Step.diffusion_signal()
      • IvimModelSegmented2Step.fit()
      • IvimModelSegmented2Step.ivim_signal()
      • IvimModelSegmented2Step.perfusion_signal()
      • IvimModelSegmented2Step.rescale_bounds_and_initial_guess()
      • IvimModelSegmented2Step.set_bounds()
      • IvimModelSegmented2Step.set_initial_guess()
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step module
    • IvimFit
      • IvimFit.D
      • IvimFit.D_star
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelSegmented3Step
      • IvimModelSegmented3Step.diffusion_signal()
      • IvimModelSegmented3Step.fit()
      • IvimModelSegmented3Step.ivim_signal()
      • IvimModelSegmented3Step.perfusion_signal()
      • IvimModelSegmented3Step.rescale_bounds_and_initial_guess()
      • IvimModelSegmented3Step.set_bounds()
      • IvimModelSegmented3Step.set_initial_guess()
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim module
    • IvimFit
      • IvimFit.D
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelsIVIM
      • IvimModelsIVIM.fit()
      • IvimModelsIVIM.rescale_bounds_and_initial_guess()
      • IvimModelsIVIM.set_bounds()
      • IvimModelsIVIM.set_initial_guess()
      • IvimModelsIVIM.sivim_model()
  • src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted module
    • IvimFit
      • IvimFit.D
      • IvimFit.D_star
      • IvimFit.S0_predicted
      • IvimFit.perfusion_fraction
      • IvimFit.shape
    • IvimModelSubtracted
      • IvimModelSubtracted.diffusion_signal()
      • IvimModelSubtracted.fit()
      • IvimModelSubtracted.perfusion_signal()
      • IvimModelSubtracted.rescale_bounds_and_initial_guess()
      • IvimModelSubtracted.set_bounds()
      • IvimModelSubtracted.set_initial_guess()
  • Module contents
• src.original.fitting.OGC_AUMC_IVIMNET package
  • Submodules
  • src.original.fitting.OGC_AUMC_IVIMNET.Example_1_simple_map module
  • src.original.fitting.OGC_AUMC_IVIMNET.Example_2_simulations module
  • src.original.fitting.OGC_AUMC_IVIMNET.Example_3_volunteer module
  • src.original.fitting.OGC_AUMC_IVIMNET.hyperparams module
    • hyperparams
    • lsqfit
    • net_pars
    • sim
    • train_pars
  • Module contents
• src.original.fitting.OGC_AmsterdamUMC package
  • Submodules
  • src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting module
    • MSE()
    • empirical_neg_log_prior()
    • fit_bayesian()
    • fit_bayesian_array()
    • fit_least_squares()
    • fit_least_squares_array()
    • fit_least_squares_array_tri_exp()
    • fit_least_squares_tri_exp()
    • fit_segmented()
    • fit_segmented_array()
    • fit_segmented_array_tri_exp()
    • fit_segmented_tri_exp()
    • flat_neg_log_prior()
    • goodness_of_fit()
    • ivim()
    • ivimN()
    • ivimN_noS0()
    • neg_log_likelihood()
    • neg_log_posterior()
    • order()
    • tqdm()
    • tri_exp()
    • tri_expN()
    • tri_expN_noS0()
  • Module contents
• src.original.fitting.OJ_GU package
  • Submodules
  • src.original.fitting.OJ_GU.ivim_seg module
    • seg()
  • Module contents
• src.original.fitting.PV_MUMC package
  • Submodules
  • src.original.fitting.PV_MUMC.triexp_fitting_algorithms module
    • correct_for_IR()
    • fit_NNLS()
    • fit_least_squares_tri_exp()
    • tri_expN()
    • tri_expN_IR()
    • tri_expN_noS0()
    • tri_expN_noS0_IR()
  • src.original.fitting.PV_MUMC.two_step_IVIM_fit module
    • fit_least_squares()
    • fit_least_squares_array()
    • two_exp()
    • two_exp_noS0()
  • Module contents
• src.original.fitting.PvH_KB_NKI package
  • Submodules
  • src.original.fitting.PvH_KB_NKI.DWI_Examples module
  • src.original.fitting.PvH_KB_NKI.DWI_functions_standalone module
    • DWI_functions.py
    • fit_ADCmap_loglinear_standalone()
    • generate_ADC_standalone()
    • generate_IVIMmaps_standalone()
    • select_b_values_standalone()
  • Module contents
• src.original.fitting.TCML_TechnionIIT package
  • Module contents
• src.original.fitting.TF_reference package
  • Submodules
  • src.original.fitting.TF_reference.segmented_IVIMfit module
    • d_fit_iterative_wls()
    • ivim_biexp()
    • segmented_IVIM_fit()
  • Module contents

Module contents