maps

maps ¶

Parameter map visualization functions.

This module provides functions for visualizing perfusion parameter maps.

NO scipy dependency - uses numpy for linear regression.

plot_parameter_map ¶

plot_parameter_map(parameter_map, slice_idx=None, axis=2, orientation=None, title=None, colormap='viridis', cmap=None, vmin=None, vmax=None, mask=None, show_mask=False, show_colorbar=True, underlay=None, alpha=1.0, ax=None, figsize=(8, 6))

Plot a 2D slice of a parameter map.

PARAMETER	DESCRIPTION
`parameter_map`	Parameter map to visualize. TYPE: `ParameterMap or NDArray`
`slice_idx`	Slice index to display. If None, uses middle slice. TYPE: `int` DEFAULT: `None`
`axis`	Axis perpendicular to the slice (0, 1, or 2). TYPE: `int` DEFAULT: `2`
`orientation`	Orientation name: "axial", "coronal", or "sagittal". If provided, overrides axis parameter. TYPE: `str` DEFAULT: `None`
`title`	Plot title. Uses parameter name if not provided. TYPE: `str` DEFAULT: `None`
`colormap`	Matplotlib colormap name. TYPE: `str` DEFAULT: `'viridis'`
`cmap`	Alias for colormap (for compatibility). TYPE: `str` DEFAULT: `None`
`vmin`	Color scale limits. TYPE: `float` DEFAULT: `None`
`vmax`	Color scale limits. TYPE: `float` DEFAULT: `None`
`mask`	Mask to apply (show only masked region). TYPE: `NDArray` DEFAULT: `None`
`show_mask`	Whether to show quality mask from ParameterMap. TYPE: `bool` DEFAULT: `False`
`show_colorbar`	Whether to show colorbar. TYPE: `bool` DEFAULT: `True`
`underlay`	Anatomical underlay image. TYPE: `NDArray` DEFAULT: `None`
`alpha`	Transparency for overlay (when underlay is provided). TYPE: `float` DEFAULT: `1.0`
`ax`	Axes to plot on. Creates new figure if None. TYPE: `Axes` DEFAULT: `None`
`figsize`	Figure size if creating new figure. TYPE: `tuple` DEFAULT: `(8, 6)`

RETURNS	DESCRIPTION
`Figure or Axes`	The figure or axes with the plot.

RAISES	DESCRIPTION
`ImportError`	If matplotlib is not available.

plot_parameter_comparison ¶

plot_parameter_comparison(*maps_args, maps=None, slice_idx=None, axis=2, colormap='viridis', figsize=None)

Plot multiple parameter maps side by side.

PARAMETER	DESCRIPTION
`*maps_args`	Parameter maps to compare (positional arguments). TYPE: `ParameterMap` DEFAULT: `()`
`maps`	List of parameter maps (alternative to positional args). TYPE: `list[ParameterMap]` DEFAULT: `None`
`slice_idx`	Slice index to display. TYPE: `int` DEFAULT: `None`
`axis`	Slice axis. TYPE: `int` DEFAULT: `2`
`colormap`	Colormap name. TYPE: `str` DEFAULT: `'viridis'`
`figsize`	Figure size. TYPE: `tuple` DEFAULT: `None`

RETURNS	DESCRIPTION
`Figure`	The figure with the plots.

create_montage ¶

create_montage(data, n_cols=5, colormap='viridis', vmin=None, vmax=None, figsize=None)

Create a montage of all slices in a 3D volume.

PARAMETER	DESCRIPTION
`data`	3D data volume. TYPE: `NDArray`
`n_cols`	Number of columns in montage. TYPE: `int` DEFAULT: `5`
`colormap`	Colormap name. TYPE: `str` DEFAULT: `'viridis'`
`vmin`	Color limits. TYPE: `float` DEFAULT: `None`
`vmax`	Color limits. TYPE: `float` DEFAULT: `None`
`figsize`	Figure size. TYPE: `tuple` DEFAULT: `None`

RETURNS	DESCRIPTION
`Figure`	The figure with the montage.