Index

A

accepted_dimensions (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) accepted_dimensions() (src.original.fitting.ETP_SRI.LinearFitting.LinearFit method)

apply_transform() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.AverageSignalsOfEqualXvals.AverageSignalsOfEqualXvals method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.FlattenImageData.FlattenImageData method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeMaxSignal.NormalizeMaxSignal method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeSignals.NormalizeSignals method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeXvals.NormalizeXvals method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalCuration.SignalCuration method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalMask.SignalMask method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SortSignalOnXval.SortSignalOnXval method) Arg (class in src.standardized.IVIM_NEToptim) at_least_1d() (in module src.original.preprocessing.EP_GU.outlier_removal) average_signal_of_equal_xvals() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.AverageSignalsOfEqualXvals.AverageSignalsOfEqualXvals static method) AverageSignalsOfEqualXvals (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.AverageSignalsOfEqualXvals)

B

ballistic() (in module src.original.preprocessing.EP_GU.outlier_removal)

C

check_regime() (in module src.original.preprocessing.EP_GU.outlier_removal) cite() (src.wrappers.OsipiBase.OsipiBase method) copy_from_wsl() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method)

copy_to_wsl() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) correct_for_IR() (in module src.original.fitting.PV_MUMC.triexp_fitting_algorithms) cvx_fit() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method)

D

D (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimFit property) D_and_Ds_swap() (src.wrappers.OsipiBase.OsipiBase method) d_fit_iterative_wls() (in module src.original.fitting.TF_reference.segmented_IVIMfit)

D_star (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimFit property) diffusion_signal() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimModelSegmented2Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimModelSegmented3Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimModelSubtracted method) diffusive() (in module src.original.preprocessing.EP_GU.outlier_removal) DT_IIITN_WLS (class in src.standardized.DT_IIITN_WLS)

E

empirical_neg_log_prior() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting)

ensure_dir() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) ETP_SRI_LinearFitting (class in src.standardized.ETP_SRI_LinearFitting)

F

fit() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimModelBiExp method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimModelLinear method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimModelSegmented2Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimModelSegmented3Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimModelsIVIM method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimModelSubtracted method) fit_ADCmap_loglinear_standalone() (in module src.original.fitting.PvH_KB_NKI.DWI_functions_standalone) fit_bayesian() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) fit_bayesian_array() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) fit_least_squares() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) (in module src.original.fitting.PV_MUMC.two_step_IVIM_fit)

fit_least_squares_array() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) (in module src.original.fitting.PV_MUMC.two_step_IVIM_fit) fit_least_squares_array_tri_exp() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) fit_least_squares_tri_exp() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) (in module src.original.fitting.PV_MUMC.triexp_fitting_algorithms) fit_NNLS() (in module src.original.fitting.PV_MUMC.triexp_fitting_algorithms) fit_segmented() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) fit_segmented_array() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) fit_segmented_array_tri_exp() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) fit_segmented_tri_exp() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) flat_neg_log_prior() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) flatten_image_data() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.FlattenImageData.FlattenImageData static method) FlattenImageData (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.FlattenImageData)

G

generate_ADC_standalone() (in module src.original.fitting.PvH_KB_NKI.DWI_functions_standalone) generate_IVIMmaps_standalone() (in module src.original.fitting.PvH_KB_NKI.DWI_functions_standalone) get_available_body_parts() (in module src.wrappers.ivim_body_part_defaults) get_body_part_defaults() (in module src.wrappers.ivim_body_part_defaults) get_corrected_name() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method)

get_corrected_name_eddy() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) get_jacobian_name() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) get_log_name() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) get_patient_workdir() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) get_warpfig_name() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) goodness_of_fit() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting)

H

hyperparams (class in src.original.fitting.OGC_AUMC_IVIMNET.hyperparams)

I

IAR_LU_biexp (class in src.standardized.IAR_LU_biexp) IAR_LU_modified_mix (class in src.standardized.IAR_LU_modified_mix) IAR_LU_modified_topopro (class in src.standardized.IAR_LU_modified_topopro) IAR_LU_segmented_2step (class in src.standardized.IAR_LU_segmented_2step) IAR_LU_segmented_3step (class in src.standardized.IAR_LU_segmented_3step) IAR_LU_subtracted (class in src.standardized.IAR_LU_subtracted) id_algorithm_type (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) id_author (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) id_ref (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) id_return_parameters (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute)

id_units (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) initialize() (src.standardized.IVIM_NEToptim.IVIM_NEToptim method) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp method) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented method) (src.standardized.Super_IVIM_DC.Super_IVIM_DC method) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA method) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm method) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf method) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA method) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm method) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf method) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS method) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit method) (src.wrappers.OsipiBase.OsipiBase method) ivim() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) ivim_biexp() (in module src.original.fitting.TF_reference.segmented_IVIMfit) ivim_fit() (in module src.wrappers.ivim_fit) (src.original.fitting.ETP_SRI.LinearFitting.LinearFit method) (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS method) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting method) (src.standardized.IAR_LU_biexp.IAR_LU_biexp method) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix method) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro method) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step method) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step method) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted method) (src.standardized.IVIM_NEToptim.IVIM_NEToptim method) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp method) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp method) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented method) (src.standardized.OJ_GU_seg.OJ_GU_seg method) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp method) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit method) (src.standardized.Super_IVIM_DC.Super_IVIM_DC method) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA method) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm method) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf method) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA method) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm method) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf method) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS method) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit method) ivim_fit_full_volume() (src.standardized.IAR_LU_biexp.IAR_LU_biexp method) (src.standardized.IVIM_NEToptim.IVIM_NEToptim method) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp method) (src.standardized.Super_IVIM_DC.Super_IVIM_DC method) ivim_mix_cost_one() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) ivim_model() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimModelBiExp method) IVIM_NEToptim (class in src.standardized.IVIM_NEToptim) ivim_selection() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalCuration.SignalCuration static method) ivim_shgo() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method) ivim_signal() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimModelSegmented2Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimModelSegmented3Step method) IvimFit (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp) (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear) (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix) (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro) (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step) (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step) (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim) (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted) IvimModelBiExp (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp) IvimModelLinear (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear) IvimModelSegmented2Step (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step) IvimModelSegmented3Step (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step) IvimModelsIVIM (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim) IvimModelSubtracted (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted) IvimModelTopoPro (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro) IvimModelVP (class in src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix) ivimN() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) ivimN_noS0() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting)

K

kurtosis() (in module src.original.preprocessing.EP_GU.outlier_removal)

L

linear_fit() (src.original.fitting.ETP_SRI.LinearFitting.LinearFit method) LinearFit (class in src.original.fitting.ETP_SRI.LinearFitting)

load_ivim_subject() (in module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_loading.load_ivim_subject) lsqfit (class in src.original.fitting.OGC_AUMC_IVIMNET.hyperparams)

M

module src src.original src.original.fitting src.original.fitting.ASD_MemorialSloanKettering src.original.fitting.DK_OGC_AmsterdamUMC src.original.fitting.DK_OGC_AmsterdamUMC.utils src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_loading src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_loading.load_ivim_subject src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.AverageSignalsOfEqualXvals src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.FlattenImageData src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeMaxSignal src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeSignals src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeXvals src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalCuration src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalMask src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SortSignalOnXval src.original.fitting.DT_IIITN src.original.fitting.DT_IIITN.wls_ivim_fitting src.original.fitting.ETP_SRI src.original.fitting.ETP_SRI.LinearFitting src.original.fitting.IAR_LundUniversity src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted src.original.fitting.OGC_AmsterdamUMC src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting src.original.fitting.OGC_AUMC_IVIMNET src.original.fitting.OGC_AUMC_IVIMNET.hyperparams src.original.fitting.OJ_GU src.original.fitting.OJ_GU.ivim_seg src.original.fitting.PV_MUMC src.original.fitting.PV_MUMC.triexp_fitting_algorithms src.original.fitting.PV_MUMC.two_step_IVIM_fit src.original.fitting.PvH_KB_NKI src.original.fitting.PvH_KB_NKI.DWI_functions_standalone src.original.fitting.TCML_TechnionIIT src.original.fitting.TF_reference src.original.fitting.TF_reference.segmented_IVIMfit src.original.preprocessing src.original.preprocessing.EP_GU src.original.preprocessing.EP_GU.outlier_removal src.original.preprocessing.MG_LU src.original.preprocessing.MG_LU.TOPED_fsl_commands src.standardized src.standardized.DT_IIITN_WLS src.standardized.ETP_SRI_LinearFitting src.standardized.IAR_LU_biexp src.standardized.IAR_LU_modified_mix src.standardized.IAR_LU_modified_topopro src.standardized.IAR_LU_segmented_2step src.standardized.IAR_LU_segmented_3step src.standardized.IAR_LU_subtracted src.standardized.IVIM_NEToptim src.standardized.OGC_AmsterdamUMC_Bayesian_biexp src.standardized.OGC_AmsterdamUMC_biexp src.standardized.OGC_AmsterdamUMC_biexp_segmented src.standardized.OJ_GU_seg src.standardized.PV_MUMC_biexp src.standardized.PvH_KB_NKI_IVIMfit src.standardized.Super_IVIM_DC src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA src.standardized.TCML_TechnionIIT_lsq_sls_lm src.standardized.TCML_TechnionIIT_lsq_sls_trf src.standardized.TCML_TechnionIIT_lsqBOBYQA src.standardized.TCML_TechnionIIT_lsqlm src.standardized.TCML_TechnionIIT_lsqtrf src.standardized.TCML_TechnionIIT_SLS src.standardized.TF_reference_IVIMfit src.wrappers src.wrappers.ivim_body_part_defaults src.wrappers.ivim_fit src.wrappers.OsipiBase

monoexp() (in module src.original.preprocessing.EP_GU.outlier_removal) MSE() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting)

N

neg_log_likelihood() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) neg_log_posterior() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) net_pars (class in src.original.fitting.OGC_AUMC_IVIMNET.hyperparams) NetArgs (class in src.standardized.IVIM_NEToptim) NetPars (class in src.standardized.IVIM_NEToptim) nlls_cost() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method)

normalize_signals() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeMaxSignal.NormalizeMaxSignal static method) (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeSignals.NormalizeSignals static method) normalize_xvals() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeXvals.NormalizeXvals static method) NormalizeMaxSignal (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeMaxSignal) NormalizeSignals (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeSignals) NormalizeXvals (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeXvals)

O

OGC_AmsterdamUMC_Bayesian_biexp (class in src.standardized.OGC_AmsterdamUMC_Bayesian_biexp) OGC_AmsterdamUMC_biexp (class in src.standardized.OGC_AmsterdamUMC_biexp) OGC_AmsterdamUMC_biexp_segmented (class in src.standardized.OGC_AmsterdamUMC_biexp_segmented) OJ_GU_seg (class in src.standardized.OJ_GU_seg) order() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) osipi_accepted_dimensions() (src.wrappers.OsipiBase.OsipiBase method) osipi_accepts_dimension() (src.wrappers.OsipiBase.OsipiBase method) osipi_author() (src.wrappers.OsipiBase.OsipiBase method) osipi_check_required_bounds() (src.wrappers.OsipiBase.OsipiBase method)

osipi_check_required_bvalues() (src.wrappers.OsipiBase.OsipiBase method) osipi_check_required_initial_guess() (src.wrappers.OsipiBase.OsipiBase method) osipi_check_required_thresholds() (src.wrappers.OsipiBase.OsipiBase method) osipi_fit() (src.wrappers.OsipiBase.OsipiBase method) osipi_fit_full_volume() (src.wrappers.OsipiBase.OsipiBase method) osipi_initiate_algorithm() (src.wrappers.OsipiBase.OsipiBase method) osipi_print_requirements() (src.wrappers.OsipiBase.OsipiBase method) osipi_simple_bias_and_RMSE_test() (src.wrappers.OsipiBase.OsipiBase method) OsipiBase (class in src.wrappers.OsipiBase)

P

perfusion_fraction (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimFit property)

perfusion_signal() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimModelSegmented2Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimModelSegmented3Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimModelSubtracted method) phi() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method) PV_MUMC_biexp (class in src.standardized.PV_MUMC_biexp) PvH_KB_NKI_IVIMfit (class in src.standardized.PvH_KB_NKI_IVIMfit)

R

required_bounds (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) required_bounds_optional (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) required_bvalues (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) required_initial_guess (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute)

required_initial_guess_optional (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) required_thresholds (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) rescale_bounds_and_initial_guess() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimModelBiExp method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimModelLinear method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimModelSegmented2Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimModelSegmented3Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimModelsIVIM method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimModelSubtracted method) reshape_to_voxelwise() (src.standardized.IVIM_NEToptim.IVIM_NEToptim method) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp method) (src.standardized.Super_IVIM_DC.Super_IVIM_DC method) roi_based() (in module src.original.preprocessing.EP_GU.outlier_removal) run_command() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) run_eddy() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) run_topup() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method)

S

S0_predicted (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimFit property) seg() (in module src.original.fitting.OJ_GU.ivim_seg) segmented_IVIM_fit() (in module src.original.fitting.TF_reference.segmented_IVIMfit) select_b_values_standalone() (in module src.original.fitting.PvH_KB_NKI.DWI_functions_standalone) set_bounds() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimModelBiExp method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimModelLinear method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimModelSegmented2Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimModelSegmented3Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimModelsIVIM method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimModelSubtracted method) set_initial_guess() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimModelBiExp method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimModelLinear method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimModelSegmented2Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimModelSegmented3Step method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimModelsIVIM method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimModelSubtracted method) shape (src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimFit property) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted.IvimFit property) signal_mask() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalMask.SignalMask static method) SignalCuration (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalCuration) SignalMask (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalMask) sim (class in src.original.fitting.OGC_AUMC_IVIMNET.hyperparams) sIVIM() (in module src.original.preprocessing.EP_GU.outlier_removal) sivim_model() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear.IvimModelLinear method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim.IvimModelsIVIM method) sort_signals_on_xval_array() (src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SortSignalOnXval.SortSignalOnXval static method) SortSignalOnXval (class in src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SortSignalOnXval) split_nifti_gz() (src.original.preprocessing.MG_LU.TOPED_fsl_commands.TOPED method) src module src.original module src.original.fitting module src.original.fitting.ASD_MemorialSloanKettering module src.original.fitting.DK_OGC_AmsterdamUMC module src.original.fitting.DK_OGC_AmsterdamUMC.utils module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_loading module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_loading.load_ivim_subject module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.AverageSignalsOfEqualXvals module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.FlattenImageData module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeMaxSignal module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeSignals module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.NormalizeXvals module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalCuration module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SignalMask module src.original.fitting.DK_OGC_AmsterdamUMC.utils.data_processing.processors.SortSignalOnXval module src.original.fitting.DT_IIITN module src.original.fitting.DT_IIITN.wls_ivim_fitting module src.original.fitting.ETP_SRI module src.original.fitting.ETP_SRI.LinearFitting module src.original.fitting.IAR_LundUniversity module src.original.fitting.IAR_LundUniversity.ivim_fit_method_biexp module src.original.fitting.IAR_LundUniversity.ivim_fit_method_linear module src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix module src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro module src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_2step module src.original.fitting.IAR_LundUniversity.ivim_fit_method_segmented_3step module src.original.fitting.IAR_LundUniversity.ivim_fit_method_sivim module src.original.fitting.IAR_LundUniversity.ivim_fit_method_subtracted module src.original.fitting.OGC_AmsterdamUMC module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting module src.original.fitting.OGC_AUMC_IVIMNET module src.original.fitting.OGC_AUMC_IVIMNET.hyperparams module src.original.fitting.OJ_GU module src.original.fitting.OJ_GU.ivim_seg module src.original.fitting.PV_MUMC module src.original.fitting.PV_MUMC.triexp_fitting_algorithms module src.original.fitting.PV_MUMC.two_step_IVIM_fit module src.original.fitting.PvH_KB_NKI module src.original.fitting.PvH_KB_NKI.DWI_functions_standalone module src.original.fitting.TCML_TechnionIIT module src.original.fitting.TF_reference module src.original.fitting.TF_reference.segmented_IVIMfit module src.original.preprocessing module src.original.preprocessing.EP_GU module src.original.preprocessing.EP_GU.outlier_removal module src.original.preprocessing.MG_LU module src.original.preprocessing.MG_LU.TOPED_fsl_commands module src.standardized module src.standardized.DT_IIITN_WLS module src.standardized.ETP_SRI_LinearFitting module src.standardized.IAR_LU_biexp module src.standardized.IAR_LU_modified_mix module

src.standardized.IAR_LU_modified_topopro module src.standardized.IAR_LU_segmented_2step module src.standardized.IAR_LU_segmented_3step module src.standardized.IAR_LU_subtracted module src.standardized.IVIM_NEToptim module src.standardized.OGC_AmsterdamUMC_Bayesian_biexp module src.standardized.OGC_AmsterdamUMC_biexp module src.standardized.OGC_AmsterdamUMC_biexp_segmented module src.standardized.OJ_GU_seg module src.standardized.PV_MUMC_biexp module src.standardized.PvH_KB_NKI_IVIMfit module src.standardized.Super_IVIM_DC module src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA module src.standardized.TCML_TechnionIIT_lsq_sls_lm module src.standardized.TCML_TechnionIIT_lsq_sls_trf module src.standardized.TCML_TechnionIIT_lsqBOBYQA module src.standardized.TCML_TechnionIIT_lsqlm module src.standardized.TCML_TechnionIIT_lsqtrf module src.standardized.TCML_TechnionIIT_SLS module src.standardized.TF_reference_IVIMfit module src.wrappers module src.wrappers.ivim_body_part_defaults module src.wrappers.ivim_fit module src.wrappers.OsipiBase module stoc_search_cost() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method) Super_IVIM_DC (class in src.standardized.Super_IVIM_DC) supported_bounds (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) supported_dimensions (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) supported_initial_guess (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute) supported_priors (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) supported_thresholds (src.standardized.DT_IIITN_WLS.DT_IIITN_WLS attribute) (src.standardized.ETP_SRI_LinearFitting.ETP_SRI_LinearFitting attribute) (src.standardized.IAR_LU_biexp.IAR_LU_biexp attribute) (src.standardized.IAR_LU_modified_mix.IAR_LU_modified_mix attribute) (src.standardized.IAR_LU_modified_topopro.IAR_LU_modified_topopro attribute) (src.standardized.IAR_LU_segmented_2step.IAR_LU_segmented_2step attribute) (src.standardized.IAR_LU_segmented_3step.IAR_LU_segmented_3step attribute) (src.standardized.IAR_LU_subtracted.IAR_LU_subtracted attribute) (src.standardized.IVIM_NEToptim.IVIM_NEToptim attribute) (src.standardized.OGC_AmsterdamUMC_Bayesian_biexp.OGC_AmsterdamUMC_Bayesian_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp.OGC_AmsterdamUMC_biexp attribute) (src.standardized.OGC_AmsterdamUMC_biexp_segmented.OGC_AmsterdamUMC_biexp_segmented attribute) (src.standardized.OJ_GU_seg.OJ_GU_seg attribute) (src.standardized.PV_MUMC_biexp.PV_MUMC_biexp attribute) (src.standardized.PvH_KB_NKI_IVIMfit.PvH_KB_NKI_IVIMfit attribute) (src.standardized.Super_IVIM_DC.Super_IVIM_DC attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA.TCML_TechnionIIT_lsq_sls_BOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_lm.TCML_TechnionIIT_lsq_sls_lm attribute) (src.standardized.TCML_TechnionIIT_lsq_sls_trf.TCML_TechnionIIT_lsq_sls_trf attribute) (src.standardized.TCML_TechnionIIT_lsqBOBYQA.TCML_TechnionIIT_lsqBOBYQA attribute) (src.standardized.TCML_TechnionIIT_lsqlm.TCML_TechnionIIT_lsqlm attribute) (src.standardized.TCML_TechnionIIT_lsqtrf.TCML_TechnionIIT_lsqtrf attribute) (src.standardized.TCML_TechnionIIT_SLS.TCML_TechnionIIT_SLS attribute) (src.standardized.TF_reference_IVIMfit.TF_reference_IVIMfit attribute)

T

TCML_TechnionIIT_lsq_sls_BOBYQA (class in src.standardized.TCML_TechnionIIT_lsq_sls_BOBYQA) TCML_TechnionIIT_lsq_sls_lm (class in src.standardized.TCML_TechnionIIT_lsq_sls_lm) TCML_TechnionIIT_lsq_sls_trf (class in src.standardized.TCML_TechnionIIT_lsq_sls_trf) TCML_TechnionIIT_lsqBOBYQA (class in src.standardized.TCML_TechnionIIT_lsqBOBYQA) TCML_TechnionIIT_lsqlm (class in src.standardized.TCML_TechnionIIT_lsqlm) TCML_TechnionIIT_lsqtrf (class in src.standardized.TCML_TechnionIIT_lsqtrf) TCML_TechnionIIT_SLS (class in src.standardized.TCML_TechnionIIT_SLS) TF_reference_IVIMfit (class in src.standardized.TF_reference_IVIMfit) TOPED (class in src.original.preprocessing.MG_LU.TOPED_fsl_commands) tqdm() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting)

train_pars (class in src.original.fitting.OGC_AUMC_IVIMNET.hyperparams) training_data() (src.standardized.IVIM_NEToptim.IVIM_NEToptim method) tri_exp() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) tri_expN() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) (in module src.original.fitting.PV_MUMC.triexp_fitting_algorithms) tri_expN_IR() (in module src.original.fitting.PV_MUMC.triexp_fitting_algorithms) tri_expN_noS0() (in module src.original.fitting.OGC_AmsterdamUMC.LSQ_fitting) (in module src.original.fitting.PV_MUMC.triexp_fitting_algorithms) tri_expN_noS0_IR() (in module src.original.fitting.PV_MUMC.triexp_fitting_algorithms) two_exp() (in module src.original.fitting.PV_MUMC.two_step_IVIM_fit) two_exp_noS0() (in module src.original.fitting.PV_MUMC.two_step_IVIM_fit)

W

wls_ivim_fit() (in module src.original.fitting.DT_IIITN.wls_ivim_fitting)

X

x_and_f_to_x_f() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method)

x_f_to_x_and_f() (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_mix.IvimModelVP method) (src.original.fitting.IAR_LundUniversity.ivim_fit_method_modified_topopro.IvimModelTopoPro method)